Publications

(Image Analysis by Ludesi)

2012

Yogesh M Kulkarni, David J Klinke, II; Protein-based identification of quantitative trait loci associated with malignant transformation in two HER2+ cellular models of breast cancer. Proteome Sci. 2012; 10: 11

2011

Meena U. Rajagopal, Yetrib Hathout, Tobey J. MacDonald, Mark W. Kieran, Sri Gururangan, Susan M. Blaney, Peter Phillips, Roger Packer, Heather Gordish-Dressman, Brian R. Rood; PROTEOMIC PROFILING OF CEREBROSPINAL FLUID IDENTIFIES PROSTAGLANDIN D2 SYNTHASE AS A PUTATIVE BIOMARKER FOR PEDIATRIC MEDULLOBLASTOMA: A PEDIATRIC BRAIN TUMOR CONSORTIUM STUDY. Proteomics. 2011 March; 11(5): 935–943

Jeffrey S. Morris, Veerabhadran Baladandayuthapani, Richard C. Herrick, Pietro Sanna, Howard Gutstein; AUTOMATED ANALYSIS OF QUANTITATIVE IMAGE DATA USING ISOMORPHIC FUNCTIONAL MIXED MODELS, WITH APPLICATION TO PROTEOMICS DATA. Ann Appl Stat. 2011 January 1; 5(2A): 894–923

Aydan Salman-Dilgimen, Pierre-Olivier Hardy, Ashley R. Dresser, George Chaconas; HrpA, a DEAH-Box RNA Helicase, Is Involved in Global Gene Regulation in the Lyme Disease Spirochete. PLoS One. 2011; 6(7): e22168

Miroslava Stastna, Ashley Behrens, Peter J McDonnell, Jennifer E Van Eyk; Analysis of protein composition of rabbit aqueous humor following two different cataract surgery incision procedures using 2-DE and LC-MS/MS. Proteome Sci. 2011; 9: 8

Walter A. Baseler, Erinne R. Dabkowski, Courtney L. Williamson, Tara L. Croston, Dharendra Thapa, Matthew J. Powell, Trust T. Razunguzwa, John M. Hollander; Proteomic alterations of distinct mitochondrial subpopulations in the type 1 diabetic heart: contribution of protein import dysfunction. Am J Physiol Regul Integr Comp Physiol. 2011 February; 300(2)

2010

García A, Eiras S, Parguiña AF, Alonso J, Rosa I, Salgado-Somoza A, Rico TY, Teijeira-Fernández E, González-Juanatey JR.; Proteins Involved in Platelet Signaling Are Differentially Regulated in Acute Coronary Syndrome: A Proteomic Study Int J Cardiol, in press.

Fernández Parguiña A, Grigorian-Shamajian L, Agra RM, Teijeira-Fernández E, Rosa I, Alonso J, Viñuela-Roldán JE, Seoane A, Ramón González-Juanatey J, García, A; High-resolution two-dimensional gel electrophoresis analysis of atrial tissue proteome reveals down-regulation of fibulin-1 in atrial fibrillation. PLoS One. 2010; 5(10): e13404

Knöll R, Kostin S, Klede S, Savvatis K, Klinge L, Stehle I, Gunkel S, Kötter S, Babicz K, Sohns M, Miocic S, Didié M, Knöll G, Zimmermann WH, Thelen P, Bickeböller H, Maier LS, Schaper W, Schaper J, Kraft T, Tschöpe C, Linke WA, Chien KR.; A common MLP (muscle LIM protein) variant is associated with cardiomyopathy. Circ Res. 2010 Mar 5;106(4):695-704. Epub 2009 Dec 31.
Pubmed Link

Andrew W. Dowsey, Jane A. English, Frederique Lisacek, Jeffrey S. Morris, Guang-Zhong Yang, Michael J. Dunn; Image analysis tools and emerging algorithms for expression proteomics. Proteomics. 2010 December; 10(23): 4226–4257

Centlow, M; Hansson, SR; Welinder, C; Differential Proteome Analysis of the Preeclamptic Placenta Using Optimized Protein Extraction. Journal of Biomedicine and Biotechnology, 2010, Volume 2010 (2010), Article ID 458748, 9 pages, DOI: 10.1155/2010/458748
Pubmed Link

2009

Erica KM Reeves, Heather Gordish-Dressman, Eric P Hoffman, Yetrib Hathout; Proteomic profiling of glucocorticoid-exposed myogenic cells: Time series assessment of protein translocation and transcription of inactive mRNAs. Proteome Sci. 2009; 7: 26

Chaves, I; Pinheiro, C; Jaiva, JAP; Planchon, S; Sergeant, K; Renaut, J; Graca, JA; Costa, G; Coelho, AV; Pinto Ricardo, CP; Proteomic evaluation of wound-healing processes in potato (Solanum tuberosum L.) tuber tissue Proteomics, 2009, Volume 9, Issue 17, 4154-4175

Penque, D; Jorge, R. Two-Dimensional Gel Electrophoresis and Mass Spectrometry for Biomarker Discovery Proteomics Clin Applications, 2009, 3, 155-172 DOI: 10.1002/prca.200800025

Sylvie Ouellette, Alexander W. Bell, Jan van Oostrum, John Bergeron; Report on the Barbados Workshop Mol Cell Proteomics. 2009 June; 8(6): 1450–1452

Woschnagg C; Forsberg J; Engström A; Odreman F; Venge P; Garcia RC. The Human Eosinophil Proteome. Changes Induced by Birch Pollen Allergy. Journal of Proteome Research 2009 April 7, DOI: 10.1021/pr800984e

G Agnetti, LA Kane, C Guarnieri, CM Caldarera, JE Van Eyk; Proteomic technologies in the study of kinases: Novel tools for the investigation of PKC in the heart. Pharmacol Res. 2007 June; 55(6): 511–522

2008

Kyoungwon Cho; Junko Shibato; Ganesh Kumar Agrawal; Young-Ho Jung; Akihiro; Kubo; Nam-Soo Jwa; Shigeru Tamogami; Kouji Satoh; Shoshi Kikuchi; Tetsuji Higashi; Shinzo Kimura; Hikaru Saji; Yoshihide Tanaka; Hitoshi Iwahashi; Yoshinori Masuo; Randeep Rakwal. Integrated Transcriptomics, Proteomics and Metabolomics Analyses to Survey Oz Responses in the Leaves of Rice Seedling. Journal of Proteome Research 2008 Jul; 7(7):2980-98

Selicharova, I.; Sanda, M.; Mladkova, J.; Ohri, S.S.; Vashishta, A.; Fusek, M.; Jiracek, J.; Vetvicka, V. 2-DE analysis of breast cancer cell lines 1833 and 4175 with distinct metastatic organ-specific potentials: comparison with parental cell line MDA-MB-231. Oncol Rep. 2008 May;19(5):1237-44

2007

Brozová M.; Bursíková, E.; Jirácek, J.; Matousková, E.; Sanda, M.; Selicharová, I.; Smutná, K.; Ubik, K.; Vydra, J. 2-DE analysis of a new human cell line EM-G3 derived from breast cancer progenitor cells and comparison with normal mammary epithelial cells. Proteomics 2007, 7:1549-1559

Alm, R; Ekefjärd, A; Krogh, M; Häkkinen, J; Emanuelsson, C. Proteomic variation is as large within as between strawberry varieties. Journal of Proteome Research 2007, 8:3011-20

Jia, S.; Omelchenko, M; Garland, D.; Vasiliou, V.; Kanungo, J.; Spencer, M.; Wolf, Y.; Koonin, E.; Piatigorsky, J. Duplicated gelsolin family genes in zebrafish: a novel scinderin-like gene (scinla) encodes the major corneal crystallin. The FASEB Journal 2007, doi: 10.1096/fj.07-8172com

Bohne Kjersem, A. Proteome changes in Atlantic cod (Gadus morhua) exposed to oil and produced water: Discovery of biomarker candidates for environmental monitoring Dissertation for the degree philosophiae doctor (PhD) at the University of Bergen, 2007, access PDF here

2006

Kristoffer Larsen, Johan Malmström, Marie Wildt, Camilla Dahlqvist, Lennart Hansson, György Marko-Varga, Leif Bjermer, Agneta Scheja, Gunilla Westergren-Thorsson. Functional and phenotypical comparison of myofibroblasts derived from biopsies and bronchoalveolar lavage in mild asthma and scleroderma. Respir Res. 2006; 7(1): 11

Niméus, E.; Malmström, J.; Johnsson, A.; Marko-Varga, G.; Fernö, M. Proteomic analysis identifies candidate proteins associated with distant recurrences in breast cancer after adjuvant chemotherapy. J. Pharmaceut. Biomed. Anal. 2006, doi:10.1016/j.jpba.2006.09.019

Galea, C. A.; Pagala, V. R.; Obenauer, J. C.; Park, C.; Slaughter, C. A.; Kriwacki, R. W. Proteomic Studies of the Intrinsically Unstructured Mammalian Proteome. Journal of Proteome Research 2006, 5:2839-2848

Culp, D. W; Neal, R.; Massey, R.; Egevad, L.; Pisa, P.; Garland, D. Proteomic Analysis of Tumor Establishment and Growth in the B16-F10 Mouse Melanoma Model. Journal of Proteome Research 2006, 5:1332-1343

2005

Bryborn, M.; Adner, M.; Cardell, L. Psoriasin, one of several new proteins identified in nasal lavage fluid from allergic and non-allergic individuals using 2-dimensional gel electrophoresis and mass spectrometry. Respiratory Research 2005, 6:118

Elliott, S.; Olsson, A.; Wallmark, G.; Karlsson, A.; Ekefjärd, A.; Van Eyk, J.; Forsström-Olsson, O. A Comparison of 2-Dimensional Electrophoresis Imaging Analysis Tools