Publications

(Image Analysis by Ludesi)

2012

Renato A.S. Oliveira, Janaina Correia-Oliveira, Li-Jun Tang, Rodolfo C. Garcia; A proteomic insight into the effects of the immunomodulatory hydroxynaphthoquinone lapachol on activated macrophages. International Immunopharmacology, Volume 14, Issue 1, September 2012, Pages 54-65

Shai E, Rosa I, Parguiña AF, Motahedeh S, Varon D, García A.; Comparative analysis of platelet-derived microparticles reveals differences in their amount and proteome depending on the platelet stimulus. J Proteomics. 2012 Mar 5. [Epub ahead of print]

Arturo Roca-Rivada, Omar Al-Massadi, Cecilia Castelao, Lucia L. Senin, Jana Alonso, Luisa Maria Seoane, Tomas García-Caballero, Felipe F. Casanueva, Maria Pardo; Muscle tissue as an endocrine organ: Comparative secretome profiling of slow-oxidative and fast-glycolytic rat muscle explants and its variation with exercise. Journal of Proteomics, In Press, Available online 15 July 2012

Yun-An Chen, Wen-Chang Chi, Tsai-Lien Huang, Chung-Yi Lin, Thi Thuy Quynh Nguyeh, Yu-Chywan Hsiung, Li-Chiao Chia, Hao-Jen Huang; Mercury-induced biochemical and proteomic changes in rice roots. Plant Physiology and Biochemistry, Volume 55, June 2012, Pages 23-32

Yogesh M Kulkarni, David J Klinke, II; Protein-based identification of quantitative trait loci associated with malignant transformation in two HER2+ cellular models of breast cancer. Proteome Sci. 2012; 10: 11

2011

Parguiña AF, Grigorian-Shamagian L, Agra RM, López-Otero D, Rosa I, Alonso J, Teijeira-Fernández E, González-Juanatey JR, García Á.; Variations in platelet proteins associated with ST-elevation myocardial infarction: novel clues on pathways underlying platelet activation in acute coronary syndromes. Arterioscler Thromb Vasc Biol. 2011 Dec;31(12):2957-64. Epub 2011 Sep 15.

Vladimir Paredes-Cervantes, Raúl Flores-Mejía, Martha C. Moreno-Lafont, Humberto Lanz-Mendoza, Ángel T. Tello-López, Jane Castillo-Vera, Victoria Pando-Robles, Gerardo Hurtado-Sil, Edith González-González, Octavio Rodríguez-Cortés, Adriana Gutiérrez-Hoya, María T. Vega-Ramírez, Rubén López-Santiago; Comparative proteome analysis of Brucella abortus 2308 and its virB type IV secretion system mutant reveals new T4SS-related candidate proteins Journal of Proteomics, Volume 74, Issue 12, 18 November 2011, Pages 2959-2971

Parguiña AF, Grigorian-Shamagian L, Agra RM, López-Otero D, Rosa I, Alonso J, Teijeira-Fernández E, González-Juanatey JR, García Á.; Comparative analysis of platelet-derived microparticles reveals differences in their amount and proteome depending on the platelet stimulus. Arterioscler Thromb Vasc Biol. 2011 Dec;31(12):2957-64. Epub 2011 Sep 15.

Kelvin K.W. Wong, Ackley C. Lane, Priscilla T.Y. Leung, V. Thiyagarajan; Response of larval barnacle proteome to CO2-driven seawater acidification. Comparative Biochemistry and Physiology Part D: Genomics and Proteomics, Volume 6, Issue 3, September 2011, Pages 310-321

Arturo Roca-Rivada, Jana Alonso, Omar Al-Massadi, Cecilia Castelao, Juan Ramón Peinado, Luisa María Seoane, Felipe F. Casanueva, María Pardo; Secretome analysis of rat adipose tissues shows location-specific roles for each depot type. Journal of Proteomics, Volume 74, Issue 7, 10 June 2011, Pages 1068-1079

Ángel García, Sonia Eiras, Andrés F. Parguiña, Jana Alonso, Isaac Rosa, Antonio Salgado-Somoza, Trinidad Yolanda Rico, Elvis Teijeira-Fernández, José Ramón González-Juanatey; High-resolution two-dimensional gel electrophoresis analysis of atrial tissue proteome reveals down-regulation of fibulin-1 in atrial fibrillation. International Journal of Cardiology, Volume 150, Issue 3, 4 August 2011, Pages 283-290

Iván Cristobo, María Jesús Larriba, Vivian de los Ríos, Francisco García, Alberto Muñoz, J. Ignacio Casal; Proteomic analysis of 1α,25-Dihydroxyvitamin D3 action on human colon cancer cells reveals a link to splicing regulation. Journal of Proteomics, Volume 75, Issue 2, 21 December 2011, Pages 384-397

Vera S. Gross, Heather K. Greenberg, Sergei V. Baranov, Greta M. Carlson, Irina G. Stavrovskaya, Alexander V. Lazarev, Bruce S. Kristal; Isolation of functional mitochondria from rat kidney and skeletal muscle without manual homogenization. Analytical Biochemistry, 15 November 2011, Volume 418, Issue 2, Pages 213-223

B.E. Maserti, R. Del Carratore, C.M. Della Croce, A. Podda, Q. Migheli, Y. Froelicher, F. Luro, R. Morillon, P. Ollitrault, M. Talon, M. Rossignol; Comparative analysis of proteome changes induced by the two spotted spider mite Tetranychus urticae and methyl jasmonate in citrus leaves. Journal of Plant Physiology. 2011 March, Volume 168, Issue 4, Pages 392-402

Renata Del Carratore, Eleonora Magaldi, Alessandra Podda, Pascale Beffy, Quirico Migheli, Bianca Elena Maserti; A stress responsive alternative splicing mechanism in Citrus clementine leaves. Journal of Plant Physiology. 2011 June, Volume 168, Issue 9, Pages 952-959

Meena U. Rajagopal, Yetrib Hathout, Tobey J. MacDonald, Mark W. Kieran, Sri Gururangan, Susan M. Blaney, Peter Phillips, Roger Packer, Heather Gordish-Dressman, Brian R. Rood; PROTEOMIC PROFILING OF CEREBROSPINAL FLUID IDENTIFIES PROSTAGLANDIN D2 SYNTHASE AS A PUTATIVE BIOMARKER FOR PEDIATRIC MEDULLOBLASTOMA: A PEDIATRIC BRAIN TUMOR CONSORTIUM STUDY. Proteomics. 2011 March; 11(5): 935–943

Jeffrey S. Morris, Veerabhadran Baladandayuthapani, Richard C. Herrick, Pietro Sanna, Howard Gutstein; AUTOMATED ANALYSIS OF QUANTITATIVE IMAGE DATA USING ISOMORPHIC FUNCTIONAL MIXED MODELS, WITH APPLICATION TO PROTEOMICS DATA. Ann Appl Stat. 2011 January 1; 5(2A): 894–923

Aydan Salman-Dilgimen, Pierre-Olivier Hardy, Ashley R. Dresser, George Chaconas; HrpA, a DEAH-Box RNA Helicase, Is Involved in Global Gene Regulation in the Lyme Disease Spirochete. PLoS One. 2011; 6(7): e22168

Miroslava Stastna, Ashley Behrens, Peter J McDonnell, Jennifer E Van Eyk; Analysis of protein composition of rabbit aqueous humor following two different cataract surgery incision procedures using 2-DE and LC-MS/MS. Proteome Sci. 2011; 9: 8

Walter A. Baseler, Erinne R. Dabkowski, Courtney L. Williamson, Tara L. Croston, Dharendra Thapa, Matthew J. Powell, Trust T. Razunguzwa, John M. Hollander; Proteomic alterations of distinct mitochondrial subpopulations in the type 1 diabetic heart: contribution of protein import dysfunction. Am J Physiol Regul Integr Comp Physiol. 2011 February; 300(2)

2010

García A, Eiras S, Parguiña AF, Alonso J, Rosa I, Salgado-Somoza A, Rico TY, Teijeira-Fernández E, González-Juanatey JR.; Proteins Involved in Platelet Signaling Are Differentially Regulated in Acute Coronary Syndrome: A Proteomic Study Int J Cardiol, in press.

Fernández Parguiña A, Grigorian-Shamajian L, Agra RM, Teijeira-Fernández E, Rosa I, Alonso J, Viñuela-Roldán JE, Seoane A, Ramón González-Juanatey J, García, A; High-resolution two-dimensional gel electrophoresis analysis of atrial tissue proteome reveals down-regulation of fibulin-1 in atrial fibrillation. PLoS One. 2010; 5(10): e13404

Knöll R, Kostin S, Klede S, Savvatis K, Klinge L, Stehle I, Gunkel S, Kötter S, Babicz K, Sohns M, Miocic S, Didié M, Knöll G, Zimmermann WH, Thelen P, Bickeböller H, Maier LS, Schaper W, Schaper J, Kraft T, Tschöpe C, Linke WA, Chien KR.; A common MLP (muscle LIM protein) variant is associated with cardiomyopathy. Circ Res. 2010 Mar 5;106(4):695-704. Epub 2009 Dec 31.
Pubmed Link

Andrew W. Dowsey, Jane A. English, Frederique Lisacek, Jeffrey S. Morris, Guang-Zhong Yang, Michael J. Dunn; Image analysis tools and emerging algorithms for expression proteomics. Proteomics. 2010 December; 10(23): 4226–4257

Centlow, M; Hansson, SR; Welinder, C; Differential Proteome Analysis of the Preeclamptic Placenta Using Optimized Protein Extraction. Journal of Biomedicine and Biotechnology, 2010, Volume 2010 (2010), Article ID 458748, 9 pages, DOI: 10.1155/2010/458748
Pubmed Link

2009

Erica KM Reeves, Heather Gordish-Dressman, Eric P Hoffman, Yetrib Hathout; Proteomic profiling of glucocorticoid-exposed myogenic cells: Time series assessment of protein translocation and transcription of inactive mRNAs. Proteome Sci. 2009; 7: 26

Chaves, I; Pinheiro, C; Jaiva, JAP; Planchon, S; Sergeant, K; Renaut, J; Graca, JA; Costa, G; Coelho, AV; Pinto Ricardo, CP; Proteomic evaluation of wound-healing processes in potato (Solanum tuberosum L.) tuber tissue Proteomics, 2009, Volume 9, Issue 17, 4154-4175

Penque, D; Jorge, R. Two-Dimensional Gel Electrophoresis and Mass Spectrometry for Biomarker Discovery Proteomics Clin Applications, 2009, 3, 155-172 DOI: 10.1002/prca.200800025

Sylvie Ouellette, Alexander W. Bell, Jan van Oostrum, John Bergeron; Report on the Barbados Workshop Mol Cell Proteomics. 2009 June; 8(6): 1450–1452

Woschnagg C; Forsberg J; Engström A; Odreman F; Venge P; Garcia RC. The Human Eosinophil Proteome. Changes Induced by Birch Pollen Allergy. Journal of Proteome Research 2009 April 7, DOI: 10.1021/pr800984e

G Agnetti, LA Kane, C Guarnieri, CM Caldarera, JE Van Eyk; Proteomic technologies in the study of kinases: Novel tools for the investigation of PKC in the heart. Pharmacol Res. 2007 June; 55(6): 511–522

2008

Kyoungwon Cho; Junko Shibato; Ganesh Kumar Agrawal; Young-Ho Jung; Akihiro; Kubo; Nam-Soo Jwa; Shigeru Tamogami; Kouji Satoh; Shoshi Kikuchi; Tetsuji Higashi; Shinzo Kimura; Hikaru Saji; Yoshihide Tanaka; Hitoshi Iwahashi; Yoshinori Masuo; Randeep Rakwal. Integrated Transcriptomics, Proteomics and Metabolomics Analyses to Survey Oz Responses in the Leaves of Rice Seedling. Journal of Proteome Research 2008 Jul; 7(7):2980-98

Selicharova, I.; Sanda, M.; Mladkova, J.; Ohri, S.S.; Vashishta, A.; Fusek, M.; Jiracek, J.; Vetvicka, V. 2-DE analysis of breast cancer cell lines 1833 and 4175 with distinct metastatic organ-specific potentials: comparison with parental cell line MDA-MB-231. Oncol Rep. 2008 May;19(5):1237-44

2007

Brozová M.; Bursíková, E.; Jirácek, J.; Matousková, E.; Sanda, M.; Selicharová, I.; Smutná, K.; Ubik, K.; Vydra, J. 2-DE analysis of a new human cell line EM-G3 derived from breast cancer progenitor cells and comparison with normal mammary epithelial cells. Proteomics 2007, 7:1549-1559

Alm, R; Ekefjärd, A; Krogh, M; Häkkinen, J; Emanuelsson, C. Proteomic variation is as large within as between strawberry varieties. Journal of Proteome Research 2007, 8:3011-20

Jia, S.; Omelchenko, M; Garland, D.; Vasiliou, V.; Kanungo, J.; Spencer, M.; Wolf, Y.; Koonin, E.; Piatigorsky, J. Duplicated gelsolin family genes in zebrafish: a novel scinderin-like gene (scinla) encodes the major corneal crystallin. The FASEB Journal 2007, doi: 10.1096/fj.07-8172com

Bohne Kjersem, A. Proteome changes in Atlantic cod (Gadus morhua) exposed to oil and produced water: Discovery of biomarker candidates for environmental monitoring Dissertation for the degree philosophiae doctor (PhD) at the University of Bergen, 2007, access PDF here

2006

Kristoffer Larsen, Johan Malmström, Marie Wildt, Camilla Dahlqvist, Lennart Hansson, György Marko-Varga, Leif Bjermer, Agneta Scheja, Gunilla Westergren-Thorsson. Functional and phenotypical comparison of myofibroblasts derived from biopsies and bronchoalveolar lavage in mild asthma and scleroderma. Respir Res. 2006; 7(1): 11

Niméus, E.; Malmström, J.; Johnsson, A.; Marko-Varga, G.; Fernö, M. Proteomic analysis identifies candidate proteins associated with distant recurrences in breast cancer after adjuvant chemotherapy. J. Pharmaceut. Biomed. Anal. 2006, doi:10.1016/j.jpba.2006.09.019

Galea, C. A.; Pagala, V. R.; Obenauer, J. C.; Park, C.; Slaughter, C. A.; Kriwacki, R. W. Proteomic Studies of the Intrinsically Unstructured Mammalian Proteome. Journal of Proteome Research 2006, 5:2839-2848

Culp, D. W; Neal, R.; Massey, R.; Egevad, L.; Pisa, P.; Garland, D. Proteomic Analysis of Tumor Establishment and Growth in the B16-F10 Mouse Melanoma Model. Journal of Proteome Research 2006, 5:1332-1343

2005

Bryborn, M.; Adner, M.; Cardell, L. Psoriasin, one of several new proteins identified in nasal lavage fluid from allergic and non-allergic individuals using 2-dimensional gel electrophoresis and mass spectrometry. Respiratory Research 2005, 6:118

Elliott, S.; Olsson, A.; Wallmark, G.; Karlsson, A.; Ekefjärd, A.; Van Eyk, J.; Forsström-Olsson, O. A Comparison of 2-Dimensional Electrophoresis Imaging Analysis Tools